ssw-py
1.0.1
Getting Started
API Documentation
Changelog
ssw-py
Index
Index
A
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B
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C
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D
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E
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F
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M
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O
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P
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R
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S
A
align() (ssw.alignmentmgr.AlignmentMgr method)
Alignment (class in ssw.alignmenttuple)
AlignmentMgr (class in ssw.alignmentmgr)
B
best_idxs (ssw.alignmentmgr.BitwiseAlignmentFlag attribute)
best_idxs_no_cigar (ssw.alignmentmgr.BitwiseAlignmentFlag attribute)
BitwiseAlignmentFlag (class in ssw.alignmentmgr)
build_dna_score_matrix() (ssw.alignmentmgr.AlignmentMgr method)
C
CIGAR (ssw.alignmenttuple.Alignment attribute)
cigar_pair_list (ssw.alignmenttuple.Alignment attribute)
D
distance_filter (ssw.alignmentmgr.BitwiseAlignmentFlag attribute)
E
end_idxs_only_no_cigar (ssw.alignmentmgr.BitwiseAlignmentFlag attribute)
F
force_align() (in module ssw.alignmentmgr)
format_force_align() (in module ssw.alignmentmgr)
M
match_score (ssw.alignmentmgr.AlignmentMgr attribute)
,
[1]
mismatch_penalty (ssw.alignmentmgr.AlignmentMgr attribute)
,
[1]
module
ssw.alignmentmgr
ssw.alignmenttuple
ssw.printer
O
optimal_score (ssw.alignmenttuple.Alignment attribute)
P
print_result() (ssw.alignmentmgr.AlignmentMgr method)
printer() (in module ssw.printer)
printResult() (ssw.alignmentmgr.AlignmentMgr method)
R
read (ssw.alignmentmgr.AlignmentMgr attribute)
read_end (ssw.alignmenttuple.Alignment attribute)
read_start (ssw.alignmenttuple.Alignment attribute)
reference (ssw.alignmentmgr.AlignmentMgr attribute)
reference_end (ssw.alignmenttuple.Alignment attribute)
reference_start (ssw.alignmenttuple.Alignment attribute)
S
score_filter (ssw.alignmentmgr.BitwiseAlignmentFlag attribute)
set_read() (ssw.alignmentmgr.AlignmentMgr method)
set_reference() (ssw.alignmentmgr.AlignmentMgr method)
setRead() (ssw.alignmentmgr.AlignmentMgr method)
setReference() (ssw.alignmentmgr.AlignmentMgr method)
ssw.alignmentmgr
module
ssw.alignmenttuple
module
ssw.printer
module
sub_optimal_score (ssw.alignmenttuple.Alignment attribute)