API Documentation
This includes a thorough documentation of all pertinent modules, functions, and classes contained within ssw-py.
- ssw.alignmentmgr
AlignmentMgr
AlignmentMgr.read
AlignmentMgr.reference
AlignmentMgr.match_score
AlignmentMgr.mismatch_penalty
AlignmentMgr.align()
AlignmentMgr.build_dna_score_matrix()
AlignmentMgr.match_score
AlignmentMgr.mismatch_penalty
AlignmentMgr.printResult()
AlignmentMgr.print_result()
AlignmentMgr.setRead()
AlignmentMgr.setReference()
AlignmentMgr.set_read()
AlignmentMgr.set_reference()
BitwiseAlignmentFlag
force_align()
format_force_align()
- ssw.alignmenttuple
Alignment
- ssw.printer
printer()